The suggested calibration routine is to
-make that scan,
-stop at the location of the maximum, look if the signal is time-dependent, reduce the power if the signal gradually goes down,
-make a few mm-long vertical or horizontal scan to address inhomogeneities and possible interference fringes,
-calculate the median value of R.
This routine will be supported as a semi-automatic feature in the upcoming software update. Meanwhile, it is a good idea to avoid bad points at least and check for the time dependence and interference.